Molecular Model Library

ODYSSEY's Molecular Model Library provides hundreds of pre-constructed samples of matter spanning a wide range of systems. Each entry allows for query of system properties, visualisation in multiple model styles, and molecular simulation. The models can be used as the entry to a classroom demonstration or as starting content for new lab activities.

In addition to all these molecular models. Any of the 27000 molecules in the RCSB's Protein Data Bank can be downloaded as a PDB file and displayed in Odyssey.

Biopolymers

Amylose
Cellulose
Cobratoxin
Collagen
Crambin
DNA Strand
Endothelin
Gramicidin S
Hemoglobin
Insulin
Messenger RNA
Phospholipase Inhibitor
Ricin
Superoxide Dismutase
Thioredoxin
Triose Phosphate Isomerase
Trp Cage Miniprotein
Vasopressin
 

Inorganic

a-Quartz
Aluminum
Ammonia
Argon
Bromine
Calcium Fluoride
Calcium
Carbon Disulfide
Carbon Oxides
Carbon Tetrachloride
Carbon
Carbonic Acid
Carbonic Acid
Cesium Chloride
Chlorine Fluoride
Chlorine Oxides
Chlorine Oxoacids
Chlorine
Chromium Complexes
Chromium
Close Packing
Cobalt Complexes
Copper Complexes
Copper
Diborane
Endohedral Fullerenes
Fluorine

Inorganic

Gold
Helium
Hydrazine
Hydrogen Bromide
Hydrogen Chloride
Hydrogen Cyanide
Hydrogen Fluoride
Hydrogen Iodide
Hydrogen Peroxide
Hydrogen Sulfide
Hydrogen
Hypohalous Acids
Iodine Pentafluoride
Iodine
Iron Complexes
Iron
Krypton
Lattice Types
Lead Tetrachloride
Lithium
Manganese Complexes
Neon
Nickel Complexes
Nickel Tetracarbonyl
Nitric Acid
Nitrogen Oxides
Nitrogen Trichloride
Nitrogen
Oxygen
Palladium Complexes
Phosgene
Phosphine
Phosphoric Acid
Phosphorus Halides
Phosphorus Oxides
Phosphorus
Oxychloride
Phosphorus
Platinum Complexes
Polonium
Potassium Fluoride
Potassium
Ruthenium Complexes
Silicon
Silver
Sodium Chloride
Sodium
Strong Acids
Sulfur Halides
Sulfur Oxides
 

Inorganic

Sulfur
Sulfuric Acid
Tetrachlorosilane
Titanium Complexes
Titanium Tetrachloride
Uranium Hexafluoride
Vanadium Complexes
Water
Xenon
Zinc Complexes
Zinc Sulfide
 

Interfaces

1-Octanol-Water
CCl4-Water
Carbon Disulfide-Water
DMF-n-Pentane
NaCl-Water
NaCl-Water
n-Pentane-Water
 

Mixtures

Air
DMSO+Water
Ethanol+Water
Jovian Atmosphere
Martian Atmosphere
Methanol+Acetamide
Methanol+Water
Natural Gas
SF6+N2+He
Syngas
Titan Atmosphere
UF6+H2
Venus Atmosphere
With Acetone
With CCl4
With Carbon Disulfide
With DMF
With Water
With n-Pentane
 

Organic

1,2-Dichloroethylene
p-Orbitals
AMP, ADP, ATP
Acetylene
Alcohol
Aldehydes
 

Organic

Alkanes, Branched
Alkanes, Linear
Alkenes
Alkyl Halides
Alkylbenzenes
Amides
Amines
Amino Acids
Amino Acids
Artificial Sweeteners
Bases for Nucleic Acids
Benzene
Carboxylic Acids
Catenane
Chlorinated Acetic Acid
Cycloalkanes
Dienes
Disaccharides
EDTA
Esters
Ethers
Ethylene Glycol
Explosives
Freons
Fuel Additives
Glycerol
Heterocycles
Inhalation Anesthetics
Ketones
Monosaccharides
Nitriles
Nitrobenzene
Nucleosides
Nucleotides
Oleic Acid
Pain Medications
Phenol
Phosphines
Polycyclic Alkanes
Polycyclic Aromatics
Polyenes
Sodium Stearate
Solvents I
Solvents II
Spirocyclic Alkanes
Steroids
Styrene
Sulfoxides
TMS
Thiols
 
Vitamins
 

Polymers

Kevlar
Nylon
PETE
PVC
Plexiglas
Polyethylene
Polypropylene
Polystyrene
Superglue
Teflon
 

Solutions

AMP in Water
Alkaline Earth Ions in Water
Alkaline Ions in Water
Aluminum Sulfate in Water
Amino Acids in Water
Benzoyl Peroxide in Acetonitrile
Bicarbonate in Water
CO2 in Water
Caffeine in CO2
Cholesterol in Chloroform
Cr Complex in Water
Folic Acid in Ethanol
Halide Ions in Water
KMnO4 in Water
Mg EDTA in Water
Monosaccharides in Water
NH4ClO4 in Water
NaCl in Water
Physiological Saline Solution
Seawater
Soap Solution
Sodium Phosphate in Water
Sucrose in Water
Superglue Solution
Thiocyanate in Water
Thiosulfate in Water
Transition Metal Ions in Water
Vasopressin in Water
Water Softener
Zinc Nitrate in Water